Track provenance

Functions for tracking changes during the data preparation and resolution steps. Most of the provenance tracking is automatically built into functions as optional arguments.

create_taxa_map()

Create taxa map

read_taxa_map()

Read taxa map

Prepare data

Functions for preparing data prior to sending to an authority system.

count_taxa()

Get counts of unique taxa

remove_taxa()

Remove taxa

replace_taxa()

Replace taxa

trim_taxa()

Trim taxa

Resolve to authority

Functions for resolving taxa to authority systems

get_classification()

Get the taxonomic classification hierarchy for taxa resolved to supported authorities

resolve_comm_taxa()

Resolve common names to an authority

resolve_sci_taxa()

Resolve scientific names to an authority

view_taxa_authorities()

View taxonomic authorities

Make metadata

Functions for creating EML

make_taxonomicCoverage()

Make taxonomicCoverage EML node

Update raw data

Functions for updating the raw data table

revise_taxa()

Revise taxonomic data