Update the taxonomic information in your data table based on the mapping containted in taxa_map.csv. function.
revise_taxa(path, x, col, sep)A path of the directory containing taxa_map.csv and the raw data table.
A data frame containing the vector of taxa names to be updated.
A character string specifying the column in x containing taxa names to be updated.
The column delimiter to use when writting the table to file. Can be comma or tab.
A copy of your data table (taxonomyCleanr_output) containing appended columns containing:
taxa_clean Both resolved and unresolved taxa.
taxa_rank Taxonomic rank of resolved taxa, otherwise NA.
taxa_authority Authority system of resolved taxa, otherwise NA.
taxa_authority_id Resolved taxa identifiers from corresponding authority system.
Unresolvable taxa will have NA values for the appended columns.